I just had the same experience as CdrRogdan... it completely ruined my Pantheon game. This is my first major gripe about this game, but i'd like to expand on it:
First Off, why do I (the user) need to click "Ok" to acknowledge a Desync? It hinders my game experience by FORCING me to acknowledge there is a lag issue. I'm usually well aware that there is. A little notice on the bottom right would suffice. Are you intentionally trying to make everyone aware that the multiplayer is broken?
Second, the cursor does dissappear, so if you can't find the Ok button while that window pops up, you're SOL. I was literally stuck in the middle of Exile for 5 minutes before I could finally play again, only to be interrupted by the same message 10 more times until the player was finally disconnected.
Stardock, GPG: UNBREAK your game.
I hadn't had a single issue until now. I'm incredibly disheartened by how unimpressive these updates are. They seem to just be replacing old problems with new ones.