Rain 1 is 150 x 1.
Rain 2 is 150 x 2.
Rain 3 is 150 x 3.
I've no idea where you got your numbers striker. Anyways, if I had to guess I'd say the tooltips are meant to be the total damage but are just off (i.e. 100x1, 100x2, 100x3), and not suggest 3 waves of 300 damage.
Edit: Upon further checking, it's only the tooltips in the skill tree that are off, after purchasing the ability you get the right ones on the bar (states 150, then 2 waves of 150 each, and 3 waves of 150 each).